Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 35
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 13 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    79.6     49        0    5.6
Qui1     Qui    85.7     42        0    4.7
Qui2     Qui    60.3     63        0    9.6
Qui3     Qui    80.6     36        0    7.6
Qui4     Qui    48.8     41        0    4.8
Rio1     Rio    74.6     67        0   11.0
Rio2     Rio    80.4     56        0    9.3
Rio3     Rio    80.6     31        0    7.3
Rio4     Rio    76.1     46        0    6.0