Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

29 CpGs in target; 19 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    20.8    149        0    7.4
Qui1     Qui    74.7     79        0    6.1
Qui2     Qui    58.8    153        1    9.1
Qui3     Qui    52.5    141        0    8.7
Qui4     Qui    29.6     81        2    5.6
Rio1     Rio    19.7    127        0    8.1
Rio2     Rio    20.6    102        0    7.6
Rio3     Rio    14.3    112        0    7.7
Rio4     Rio    17.6    148        1    9.0