Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 43
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

34 CpGs in target; 8 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     9.3     43        0    3.1
Qui1     Qui    58.0     69        1    3.5
Qui2     Qui    34.9     63        0    3.4
Qui3     Qui    25.9     81        0    3.5
Qui4     Qui    40.0     55        0    2.5
Rio1     Rio     9.0     89        0    6.4
Rio2     Rio    15.6     45        0    3.2
Rio3     Rio    23.8     21        0    2.1
Rio4     Rio     5.1     79        1    4.3