Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 16
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     34        0    9.9
Qui1     Qui    22.0     50        0   10.1
Qui2     Qui    48.2     56        0    9.1
Qui3     Qui    23.0     61        0   10.2
Qui4     Qui    26.5     49        0    7.2
Rio1     Rio     1.7     59        0    9.3
Rio2     Rio     0.0     39        0    9.9
Rio3     Rio     2.0     49        0   10.0
Rio4     Rio     1.9     52        0    9.9