Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 31
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

7 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      4        0    7.2
Qui1     Qui    50.0      8        0    5.2
Qui2     Qui    71.4      7        0    8.8
Qui3     Qui    31.2     32        0   10.1
Qui4     Qui    61.5     39        0   10.6
Rio1     Rio    65.6     32        0    9.2
Rio2     Rio    76.9     26        0    8.1
Rio3     Rio    66.7     15        0    3.9
Rio4     Rio    83.3     12        0    6.2