Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 47
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

25 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    22.5     71        0    7.8
Qui1     Qui    29.3     75        0    6.3
Qui2     Qui    50.5     95        0    6.2
Qui3     Qui    45.5     66        0    5.3
Qui4     Qui    78.1     32        0    5.0
Rio1     Rio     1.2     86        0    6.4
Rio2     Rio     7.3     41        0    4.8
Rio3     Rio     4.8     62        0    4.1
Rio4     Rio     0.0     78        0    5.4