Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 27
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

23 CpGs in target; 23 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     5.4     92        0    7.8
Qui1     Qui     0.0     97        0    6.4
Qui2     Qui    41.5    106        0    9.6
Qui3     Qui    28.7     94        1    6.8
Qui4     Qui    42.3     71        0    5.5
Rio1     Rio     0.0     95        1    9.5
Rio2     Rio     0.0    146        0   10.6
Rio3     Rio     1.0    100        0    6.4
Rio4     Rio     1.7     58        0    4.6