Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 29
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

11 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.9     31        0    6.6
Qui1     Qui    69.2     39        0    5.5
Qui2     Qui    42.9     21        0    3.7
Qui3     Qui    66.7     63        0    7.2
Qui4     Qui   100.0      7        0    3.8
Rio1     Rio    93.9     66        0    7.3
Rio2     Rio    85.7     21        0    4.2
Rio3     Rio    97.1     34        0    2.8
Rio4     Rio    90.9     77        0    9.2