Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      7        0   12.0
Qui1     Qui    50.0      6        0   16.5
Qui2     Qui    35.7     14        0   22.5
Qui3     Qui    40.0     10        0   23.0
Qui4     Qui    44.4      9        0   11.0
Rio1     Rio     0.0     15        0   24.0
Rio2     Rio     6.7     15        0   18.5
Rio3     Rio     0.0      6        0   13.0
Rio4     Rio    10.0     10        0   19.5