Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 40
  seen in >= 2 oysters: 12
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 7  [CpG-destroying: 4]
    23348530 C>A  Pum=0.0  Qui=0.474  Rio=1.0
    23348585 C>T  Pum=0.0  Qui=0.444  Rio=1.0
    23348729 G>A  Pum=0.0  Qui=0.429  Rio=0.952
    23348841 C>T  Pum=  Qui=0.312  Rio=1.0
    23348866 A>T  Pum=0.091  Qui=0.29  Rio=1.0
    23348877 A>T  Pum=0.1  Qui=0.273  Rio=1.0
    23348959 G>A  Pum=0.143  Qui=0.4  Rio=1.0

27 CpGs in target; 12 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    91.0    155        0   10.1
Qui1     Qui     0.0     44        0    4.9
Qui2     Qui    85.7    112        0   10.8
Qui3     Qui    59.5     79        0    8.0
Qui4     Qui    63.5     85        0    7.2
Rio1     Rio     1.3     79        0    6.5
Rio2     Rio     2.1     48        0    6.7
Rio3     Rio     0.0     70        0    7.9
Rio4     Rio     0.9    108        0    7.9