Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 9
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

23 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    69.8    106        0    8.2
Qui1     Qui    61.1     72        0    6.5
Qui2     Qui    64.4     73        0    5.6
Qui3     Qui    58.7     63        0    5.8
Qui4     Qui    54.0     50        0    4.5
Rio1     Rio    82.1     78        0    9.4
Rio2     Rio    66.2     71        0    6.7
Rio3     Rio    75.6     45        0    3.5
Rio4     Rio    77.1    105        0    6.2