Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 13
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

6 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    68.0     25        0   10.4
Qui1     Qui    52.9     17        0    6.7
Qui2     Qui    45.2     31        0   10.5
Qui3     Qui    41.7     24        0   10.2
Qui4     Qui    45.8     24        0    8.7
Rio1     Rio    76.5     17        0    9.0
Rio2     Rio    59.4     32        0   12.3
Rio3     Rio    61.1     18        0    7.5
Rio4     Rio    60.9     23        0    9.7