Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum              0        0   23.0
Qui1     Qui              0        0   21.5
Qui2     Qui              0        0   28.0
Qui3     Qui   100.0      2        0   25.5
Qui4     Qui   100.0      3        0   23.0
Rio1     Rio   100.0      1        0   17.0
Rio2     Rio   100.0      1        0   20.0
Rio3     Rio              0        0   16.5
Rio4     Rio              0        0   26.0