Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 20
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

34 CpGs in target; 19 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    96.9     96        0    5.5
Qui1     Qui    94.2    104        0    6.8
Qui2     Qui    93.6     78        0    6.1
Qui3     Qui    96.2    130        0    6.5
Qui4     Qui    96.3    109        0    5.0
Rio1     Rio    46.5    127        0    8.7
Rio2     Rio    65.0     60        0    5.6
Rio3     Rio    43.7     71        0    3.9
Rio4     Rio    93.7     63        0    6.9