Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    90227062 G>A  Pum=1.0  Qui=0.792  Rio=0.04

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      6        0    8.0
Qui1     Qui     0.0      5        0    7.0
Qui2     Qui     0.0      7        0    8.0
Qui3     Qui    33.3      6        0    8.0
Qui4     Qui    33.3      6        0    6.0
Rio1     Rio    70.0     10        0   11.0
Rio2     Rio   100.0      5        0    6.0
Rio3     Rio    85.7      7        0    9.0
Rio4     Rio     0.0      3        0    4.0