Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 8
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 1]
    89990649 G>A  Pum=  Qui=0.917  Rio=0.0
    89990668 C>A  Pum=  Qui=0.769  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        0    5.5
Qui1     Qui     0.0      4        0    6.0
Qui2     Qui     0.0      2        0    5.0
Qui3     Qui    20.0      5        0   11.0
Qui4     Qui     0.0      1        0    4.0
Rio1     Rio   100.0      6        0   11.0
Rio2     Rio   100.0      1        0    7.0
Rio3     Rio    75.0      4        0    6.0
Rio4     Rio   100.0      3        0    9.0