Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    89966793 C>T  Pum=0.818  Qui=0.783  Rio=0.0

1 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      4        1   15.5
Qui1     Qui     0.0      7        1   12.0
Qui2     Qui     0.0      8        1   13.5
Qui3     Qui    33.3      6        1   13.0
Qui4     Qui     0.0      6        1   11.0
Rio1     Rio   100.0      7        0   13.0
Rio2     Rio   100.0      4        0    9.0
Rio3     Rio    90.9     11        0   16.0
Rio4     Rio   100.0     11        0   16.0