Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 22
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    89966669 C>T  Pum=0.818  Qui=0.85  Rio=0.0
    89966793 C>T  Pum=0.818  Qui=0.783  Rio=0.0

24 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    69.2     52        2    8.8
Qui1     Qui    74.5     51        2    6.6
Qui2     Qui    66.7     42        2    5.2
Qui3     Qui    85.0     40        2    5.4
Qui4     Qui    53.8     39        2    5.3
Rio1     Rio    95.8     48        0    5.4
Rio2     Rio    97.9     47        1    5.0
Rio3     Rio    93.6     47        0    6.2
Rio4     Rio    98.1     52        0    7.0