Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    8913 C>T  Pum=  Qui=1.0  Rio=0.069
    8924 C>T  Pum=  Qui=0.958  Rio=0.034

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3      3        1    6.0
Qui1     Qui     0.0      3        1    6.0
Qui2     Qui     0.0      2        1    8.0
Qui3     Qui     0.0      2        1   12.0
Qui4     Qui     0.0      3        1    7.0
Rio1     Rio   100.0      2        0    9.0
Rio2     Rio    50.0      2        1    7.0
Rio3     Rio   100.0      1        0    6.0
Rio4     Rio              0        0   13.0