Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

22 CpGs in target; 18 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    46.3    164        1   11.9
Qui1     Qui    30.1    113        0    8.2
Qui2     Qui    30.4    217        1   14.3
Qui3     Qui    21.1    161        0   12.0
Qui4     Qui    28.1     64        0    4.9
Rio1     Rio    50.5    184        1   15.5
Rio2     Rio    55.3     85        0    7.4
Rio3     Rio    35.5    155        0   12.7
Rio4     Rio    63.4    131        0   10.9