Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      5        0    8.0
Qui1     Qui    14.3      7        0   13.0
Qui2     Qui    14.3      7        0    8.0
Qui3     Qui    26.7     15        0   21.0
Qui4     Qui    33.3      6        0   14.0
Rio1     Rio    33.3      3        0    5.5
Rio2     Rio    50.0      8        0   13.0
Rio3     Rio    50.0      4        0   11.0
Rio4     Rio    75.0      8        0   15.0