Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 3  [CpG-destroying: 3]
    81483400 G>A  Pum=0.167  Qui=0.889  Rio=0.0
    81483411 G>A  Pum=0.333  Qui=0.842  Rio=0.0
    81483432 G>A  Pum=0.333  Qui=0.864  Rio=0.0

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7      6        0    6.0
Qui1     Qui     0.0      4        0    5.0
Qui2     Qui     0.0      8        0    8.0
Qui3     Qui    50.0      4        0    6.0
Qui4     Qui     0.0      3        0    3.0
Rio1     Rio   100.0      9        0   11.0
Rio2     Rio   100.0     10        0   11.0
Rio3     Rio   100.0      2        0    3.0
Rio4     Rio    85.7      7        0    8.0