Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    77548463 G>A  Pum=0.714  Qui=0.867  Rio=0.316

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    28.6      7        0   12.0
Qui1     Qui     0.0      6        0   15.0
Qui2     Qui    50.0      2        0    9.0
Qui3     Qui    20.0      5        0   11.0
Qui4     Qui     0.0      2        0    4.0
Rio1     Rio    60.0      5        0   12.5
Rio2     Rio    37.5      8        0   24.0
Rio3     Rio    66.7      3        0   10.0
Rio4     Rio    66.7      3        0   16.0