Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 32
  seen in >= 2 oysters: 7
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 1]
    71099364 A>T  Pum=  Qui=0.567  Rio=0.0
    71099496 A>G  Pum=0.5  Qui=0.61  Rio=0.0
    71099548 G>T  Pum=0.4  Qui=0.6  Rio=0.0
    71099756 C>T  Pum=  Qui=0.733  Rio=0.0
    71099856 T>C  Pum=0.375  Qui=0.5  Rio=0.0

7 CpGs in target; 2 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    64.7     17        0    5.6
Qui1     Qui    52.9     17        0    8.9
Qui2     Qui    37.5     16        1    9.8
Qui3     Qui    45.5     22        1    9.3
Qui4     Qui    57.1     14        1    8.6
Rio1     Rio    75.0     12        0   11.8
Rio2     Rio    76.9     13        0    7.2
Rio3     Rio    75.0      8        0    4.7
Rio4     Rio    94.4     18        0    8.7