Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 0]
    70568356 G>T  Pum=0.75  Qui=0.97  Rio=0.111

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    33.3      9        0    9.5
Qui1     Qui     0.0      8        0   12.0
Qui2     Qui     0.0      8        0   11.0
Qui3     Qui     0.0      9        0   13.0
Qui4     Qui     0.0      7        0    8.0
Rio1     Rio   100.0     13        0   14.5
Rio2     Rio    25.0      4        0    6.0
Rio3     Rio    85.7      7        0    9.0
Rio4     Rio    90.0     10        0   11.5