Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 2]
    70528254 C>T  Pum=  Qui=1.0  Rio=0.091
    70528305 C>T  Pum=  Qui=1.0  Rio=0.182

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      6        0    8.0
Qui1     Qui     0.0      6        1    9.0
Qui2     Qui     0.0      9        0    9.5
Qui3     Qui     0.0     10        0   12.0
Qui4     Qui    11.1      9        1   14.5
Rio1     Rio   100.0      2        0    9.0
Rio2     Rio    60.0      5        0    7.0
Rio3     Rio    72.7     11        0   12.0
Rio4     Rio    62.5      8        0    9.0