Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 35
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

8 CpGs in target; 3 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    46.9     32        0    6.7
Qui1     Qui    66.7     54        0    8.1
Qui2     Qui    31.1     45        1    8.3
Qui3     Qui    53.1     32        0    7.7
Qui4     Qui    69.6     46        0    6.9
Rio1     Rio    39.0     59        0    7.8
Rio2     Rio    24.5     49        0    7.9
Rio3     Rio    20.0     30        0    5.9
Rio4     Rio    26.9     26        0    5.6