Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

39 CpGs in target; 10 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    35.8    134        0    8.8
Qui1     Qui    45.9     98        0    5.6
Qui2     Qui    50.0     70        0    6.5
Qui3     Qui    42.2     90        0    9.0
Qui4     Qui    41.8     79        0    4.6
Rio1     Rio    36.7     90        0   11.7
Rio2     Rio    29.8     84        0    7.4
Rio3     Rio    29.0    124        0    6.6
Rio4     Rio    31.0     29        0    7.5