Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    20.0     15        0   15.5
Qui1     Qui    44.4      9        0   11.0
Qui2     Qui    44.4      9        0   10.0
Qui3     Qui    57.1     14        0   17.0
Qui4     Qui    20.0     10        0   12.0
Rio1     Rio     0.0     10        0   14.0
Rio2     Rio     5.9     17        0   21.0
Rio3     Rio     0.0      7        0   10.0
Rio4     Rio    18.2     11        0   11.0