Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 6
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      3        0    9.0
Qui1     Qui    90.9     11        1   21.0
Qui2     Qui    87.5      8        1   24.5
Qui3     Qui   100.0      2        0    7.0
Qui4     Qui    87.5      8        1   19.0
Rio1     Rio    87.5      8        0   19.0
Rio2     Rio   100.0      9        0   18.0
Rio3     Rio   100.0      6        0    9.0
Rio4     Rio   100.0      7        0   12.0