Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    88.9      9        0   10.0
Qui1     Qui    42.9      7        0    8.0
Qui2     Qui    72.7     11        0   11.5
Qui3     Qui    25.0      4        0    5.0
Qui4     Qui    83.3      6        0    6.0
Rio1     Rio    66.7      6        0    8.0
Rio2     Rio   100.0      5        0    6.0
Rio3     Rio   100.0     12        0   12.0
Rio4     Rio   100.0      7        0    7.0