Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    17538950 C>T  Pum=0.286  Qui=0.565  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    50.0      2        1    9.0
Qui1     Qui   100.0      2        1   10.0
Qui2     Qui     0.0      3        1   12.0
Qui3     Qui    50.0      4        1    8.0
Qui4     Qui     0.0      3        0    5.0
Rio1     Rio   100.0      4        0   13.5
Rio2     Rio    50.0      2        0    7.0
Rio3     Rio    88.9      9        0   15.0
Rio4     Rio    66.7      6        0   11.0