Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 1
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    17538262 G>A  Pum=0.333  Qui=0.786  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    66.7      6        0   20.0
Qui1     Qui    33.3      3        0   10.0
Qui2     Qui    33.3      3        0   13.0
Qui3     Qui    20.0      5        0   16.0
Qui4     Qui     0.0      3        0   13.0
Rio1     Rio   100.0      5        0   16.0
Rio2     Rio   100.0      3        0    5.5
Rio3     Rio              0        0    8.0
Rio4     Rio   100.0      4        0   12.0