Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 33
  seen in >= 2 oysters: 6
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 5  [CpG-destroying: 1]
    14943321 C>A  Pum=  Qui=0.75  Rio=0.105
    14943371 G>T  Pum=1.0  Qui=0.871  Rio=0.032
    14943439 T>A  Pum=1.0  Qui=0.75  Rio=0.113
    14943455 A>G  Pum=0.75  Qui=0.583  Rio=0.039
    14943463 G>A  Pum=  Qui=0.839  Rio=0.077

11 CpGs in target
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    44.0     25        0    4.6
Qui1     Qui    42.3     26        0    4.7
Qui2     Qui    35.7     56        0    7.1
Qui3     Qui    42.5     40        0    4.5
Qui4     Qui    38.8     49        0    3.7
Rio1     Rio    66.7     63        0   11.2
Rio2     Rio    71.8     39        3    5.8
Rio3     Rio    72.9     48        0    8.2
Rio4     Rio    84.0    100        0   11.7