Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 24
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

31 CpGs in target; 16 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    74.8    111        0    9.9
Qui1     Qui     0.0    152        0    8.3
Qui2     Qui     3.9    129        0    9.3
Qui3     Qui     0.0     33        0    4.6
Qui4     Qui    31.4     70        0    6.8
Rio1     Rio    55.6    133        0   10.5
Rio2     Rio    37.6     85        0    7.9
Rio3     Rio    38.9     72        0    6.5
Rio4     Rio    74.9    167        0   11.6