Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 16
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

12 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0    5.5
Qui1     Qui    81.1     37        0    6.2
Qui2     Qui    40.0     15        0    5.5
Qui3     Qui    85.0     20        0    5.7
Qui4     Qui    80.0     20        0    3.2
Rio1     Rio    50.0     24        0    5.6
Rio2     Rio    61.9     21        0    4.6
Rio3     Rio    63.6     22        0    4.0
Rio4     Rio    69.2     13        0    3.5