Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

21 CpGs in target; 6 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    96.4     55        0    4.7
Qui1     Qui    55.0     40        0    4.3
Qui2     Qui    69.0     42        0    2.8
Qui3     Qui    44.4     45        0    4.1
Qui4     Qui    38.6     70        0    4.2
Rio1     Rio    82.1     39        0    2.7
Rio2     Rio    78.3     69        0    4.3
Rio3     Rio    96.7     30        0    4.4
Rio4     Rio    53.7     41        0    2.7