Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 5
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 2  [CpG-destroying: 0]
    67378267 C>A  Pum=0.4  Qui=0.667  Rio=0.13
    67378277 A>G  Pum=0.333  Qui=0.609  Rio=0.107

1 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      1        0    6.0
Qui1     Qui              0        0   10.0
Qui2     Qui              0        0    5.0
Qui3     Qui   100.0      1        0    6.0
Qui4     Qui              0        0    3.0
Rio1     Rio   100.0      2        0    9.0
Rio2     Rio              0        0    3.0
Rio3     Rio   100.0      1        0    6.0
Rio4     Rio              0        0    9.0