Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 4
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     10        0   27.5
Qui1     Qui     9.1     11        0   41.0
Qui2     Qui    66.7      6        0   27.0
Qui3     Qui    25.0      4        0   23.5
Qui4     Qui     0.0      3        0   20.0
Rio1     Rio     0.0     11        0   44.5
Rio2     Rio     0.0      8        0   24.0
Rio3     Rio     0.0      5        0   31.0
Rio4     Rio     0.0      7        0   32.5