Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0     15        0   16.5
Qui1     Qui    50.0     12        0   16.5
Qui2     Qui    87.5      8        0    9.0
Qui3     Qui    55.6      9        0   10.0
Qui4     Qui    68.8     16        0   21.0
Rio1     Rio    11.1      9        0   12.0
Rio2     Rio    14.3      7        0    8.0
Rio3     Rio    16.7      6        0    9.5
Rio4     Rio    30.8     13        0   18.0