Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 27
  seen in >= 2 oysters: 5
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

15 CpGs in target; 0 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    92.3     13        0   10.6
Qui1     Qui    70.0     10        0    9.3
Qui2     Qui    70.0     10        0    8.4
Qui3     Qui    94.7     19        0   11.8
Qui4     Qui    30.3     33        0    9.4
Rio1     Rio     0.0      4        0    7.9
Rio2     Rio     0.0      5        0    6.5
Rio3     Rio     0.0      6        0   10.5
Rio4     Rio     0.0     15        0    9.6