Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 28
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

20 CpGs in target; 9 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    81.1     53        0    6.6
Qui1     Qui    37.9     66        0    6.2
Qui2     Qui    90.2     51        0    6.9
Qui3     Qui    93.5     77        0    6.9
Qui4     Qui    22.7     44        0    5.9
Rio1     Rio     1.2     84        0    8.1
Rio2     Rio     0.0     38        0    3.9
Rio3     Rio     0.0     48        0    6.3
Rio4     Rio     0.0     58        0    6.9