Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 3
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    14.3      7        0   19.0
Qui1     Qui    33.3      6        0   13.5
Qui2     Qui    33.3      6        0    8.5
Qui3     Qui    28.6      7        0   13.5
Qui4     Qui    25.0      4        0    8.0
Rio1     Rio   100.0      6        0   12.0
Rio2     Rio   100.0      3        0    6.5
Rio3     Rio   100.0      4        0    5.0
Rio4     Rio   100.0      5        0    9.0