Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 18
  seen in >= 2 oysters: 0
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

9 CpGs in target; 7 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    57.7     52        0    9.2
Qui1     Qui    55.6     36        1    8.7
Qui2     Qui    60.3     78        0   11.7
Qui3     Qui    45.7     35        0    7.5
Qui4     Qui    67.3     52        0    7.6
Rio1     Rio    82.9     41        0   11.6
Rio2     Rio    77.6     67        0    9.9
Rio3     Rio    82.7     52        0    8.8
Rio4     Rio    92.7     82        0   11.8