Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 17
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

6 CpGs in target; 5 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    94.1     17        0    6.6
Qui1     Qui    57.1     35        0    7.9
Qui2     Qui    47.1     17        0    5.0
Qui3     Qui    46.7     15        0    7.2
Qui4     Qui    77.8      9        0    4.8
Rio1     Rio    85.7     21        0    6.6
Rio2     Rio    50.0     18        0    6.8
Rio3     Rio    86.7     15        0    7.3
Rio4     Rio    72.2     18        0    7.6