Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 4
  seen in >= 2 oysters: 1
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    1107345 C>T  Pum=0.0  Qui=0.0  Rio=0.667

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    75.0      4        0   13.0
Qui1     Qui    71.4     14        0   15.0
Qui2     Qui    66.7      9        0   15.0
Qui3     Qui    66.7      6        0   13.0
Qui4     Qui    83.3      6        0    9.0
Rio1     Rio    27.3     11        1   18.5
Rio2     Rio     0.0      5        1   12.0
Rio3     Rio    33.3      6        0    8.0
Rio4     Rio    28.6      7        1   14.0