Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 10
  seen in >= 2 oysters: 3
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    74359289 G>A  Pum=0.0  Qui=0.55  Rio=0.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    83.3      6        0   10.0
Qui1     Qui   100.0      3        0    4.0
Qui2     Qui    33.3      6        0   13.0
Qui3     Qui    20.0      5        0   11.0
Qui4     Qui    57.1      7        0   10.5
Rio1     Rio    50.0      4        0   13.5
Rio2     Rio   100.0      5        0   10.0
Rio3     Rio   100.0      2        0    5.0
Rio4     Rio   100.0      7        0   12.0