Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 2
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    63126338 G>A  Pum=0.0  Qui=0.467  Rio=1.0

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum   100.0      7        0    9.5
Qui1     Qui    25.0      4        0    7.0
Qui2     Qui    36.4     11        0   15.0
Qui3     Qui    46.2     13        0   19.5
Qui4     Qui   100.0      3        0    7.0
Rio1     Rio     0.0      6        0   11.0
Rio2     Rio     0.0      9        0   15.0
Rio3     Rio     0.0      8        0   12.0
Rio4     Rio     0.0      5        0   10.0