Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 7
  seen in >= 2 oysters: 2
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 1  [CpG-destroying: 1]
    63108836 G>A  Pum=0.0  Qui=0.324  Rio=0.861

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum    90.0     10        0   11.0
Qui1     Qui    42.9      7        0    7.5
Qui2     Qui    40.0     10        0   14.0
Qui3     Qui    44.4      9        0   14.0
Qui4     Qui    77.8      9        0   12.0
Rio1     Rio     0.0      7        0   14.0
Rio2     Rio     0.0     12        0   17.0
Rio3     Rio    10.0     10        0   11.0
Rio4     Rio     0.0      7        0   15.0