Variant sites (alt >= 25% at informative depth >= 4 in any oyster): 11
  seen in >= 2 oysters: 10
  differ between Qui vs Rio (pooled alt-frequency difference >= 0.5): 0  [CpG-destroying: 0]

1 CpGs in target; 1 testable for SNPs (>= 8 pooled genotype reads at C and G in each of Qui, Rio)
sample   pop   meth%  calls CtoT_snp  depth
Pum1     Pum     0.0      6        0   14.0
Qui1     Qui    25.0     16        0   43.5
Qui2     Qui    57.1      7        0   28.5
Qui3     Qui    16.7      6        0   19.5
Qui4     Qui    50.0      8        0   25.0
Rio1     Rio     0.0      7        0   18.5
Rio2     Rio     0.0     15        0   43.0
Rio3     Rio     0.0      5        0   10.0
Rio4     Rio     0.0      9        0   23.5